Plot mxFDA object

Usage

# S3 method for mxFDA
plot(x, filter_cols = NULL, ...)

Arguments

x: object of class mxFDA to be plotted
filter_cols: column key to filter
...: additional paramters including y, what, and sampleID to inform whats to be plotted

Value

object of class ggplot compatible the ggplot2 aesthetics

Details

If there are multiple metrics that are included in the derived table, an extra parameter filter_cols in the format of c(Derived_Column = "Level_to_Filter") will return curves from the Derived_Column with the level Level_to_Filter

When plotting mFPCA objects, additional arguments level1 and level2 help indicate which FPCA from level 1 and level 2 to plot

Author

Alex Soupir alex.soupir@moffitt.org

Examples

#set seed
set.seed(333)
#plotting summary
data("ovarian_FDA")
plot(ovarian_FDA, y = 'fundiff', what = 'uni g')

#running fpca
ovarian_FDA = run_fpca(ovarian_FDA, metric = "uni g", r = "r", value = "fundiff",
                       lightweight = TRUE,
                       pve = .99)
#> 128 sample have >= 4 values for FPCA; removing 0 samples
#plot fpca
plot(ovarian_FDA, what = 'uni g fpca', pc_choice = 1)